spacer
spacer
spacer
spacer
spacer
spacer
spacer
spacer
spacer
spacer
spacer
spacer
spacer
spacer
spacer
spacer


Crary Lab

The very labour intense nature of extracting soil invertebrates (i.e nematodes, tardigrades and rotifers) made the processing of soil samples in the field unrealistic. To get around this problem soils were shipped, via helicopter, to the state of the art Crary lab at McMurdo Station. McMurdo Station is the main US base in Antarctica and is just two kilometers from New Zealand’s very own Scott Base.

Karen extracting soil invertebrates for counting - Nick Demetras Dr. Byron Adams & Nick - Nick Demetras


In the Crary lab at McMurdo Station a team of both NZ and US soil scientists, continuing a long and illustrious history of collaboration, worked side by side day and night to extract, analyse and catologue each and every soil sample. This grand task often resulted in very long days in the lab and at the microscope, often upwards of 15-20 hours per day, six days per week. Then again, when there is 24 hours of sunlight, who needs to sleep!?!

Once back at the lab, soil samples were sorted and placed in specially designated refrigerators at 4°C. Soil invertebrates were then extracted according to the protocols of the preeminent Antarctic soil scientist Dr. Diana H. Wall. The following is a brief summary of the fate of an Antarctic soil sample in the lab...

1) In a sterile fume hood pour approximately 100 g of soil into a clean beaker
2) Add approximately 650 mL of COLD tap water
3) Stir carefully in a figure eight pattern for exactly 30 seconds
4) Immediately pour liquid onto a stack of wet soil screens- 40 mesh (425micro-m) on top of a 400 mesh (38 micro-m) soil screen
5) Rinse gently with cold tap water through the top of the stack, keeping the screens at an angle, as the water filters through.
6) Remove the top screen.
7) Rinse top down, never directly on top of nematodes, but at the top of the screen and from behind. Let the water cascade down and carry the nematodes into the bottom wedge of the angled screen. Tap the side of the screen gently to filter all the water through. Rinse from the front and the back, keeping the screen at an angle and not allowing the water to overflow the edge of the screen.
8) Backwash the nematodes into a 50 mL plastic centrifuge tube, tipping the screen into the funnel above the tube. Rinse funnel gently.
9) Put in the centrifuge, making sure to balance the load, for five minutes at 1750 RPM.
10) Decant off liquid, leaving a few mL on top of the soil.
11) Fill with chilled 1.33M sugar solution (454g/L tap water).
12) Stir gently with spatula until pellet is broken up and suspended.
13) Centrifuge for one minute at 1750 RPM.
14) Decant into wet 500 mesh (25micro-m) screen which collects the invertebrates while allowing the sugar solution to drain away.
15) Rinse well with tap water and backwash into a centrifuge tube. Try to keep volume below 10mL so sample will fit in counting dish. 16) Refrigerate samples at 4-5°C until ready to count.


...once extracted, soil invertebrates were counted in a small plastic dish using a specialised inverted light microscope at 100-200X. After a sample was counted and recorded, it is then preserved in either 95% ethanol or 10% formalin. If samples are to be used for later molecular analysis (that’s DNA baby!) then they must be preserved in ethanol.

Nick using the Centrifuge - Nick Demetras The McMurdo team spends long hours at the microscopes counting soil invertebrates - Nick Demetras


Though the NZ and US soil scientists working in the Crary lab at McMurdo station worked long and demanding hours they did however manage to find time to enjoy the social and sporting activities McMurdo Station has to offer. Between work, the indoor soccer, basketball, and rock climbing leagues in the its spacious gymnasium as well as weekly acoustic jam sessions at the wine bar there truly was no time to sleep at McMurdo station.